* Built-in support for Google Android, Spring, Hibernate, Eclipse plug-ins, TDD, JDBC, EJBs, and more (mobile, embedded, Java EE...) * Integrates with Parasoft SOAtest for end-to-end functional and load testing for web, SOA, and cloud development. * Exposes runtime defects that occur as the application is exercised by unit, manual, or scripted tests–including race conditions, exceptions, resource leaks, and security attack vulnerabilities * Without requiring execution, identifies execution paths that can trigger runtime defects * Checks compliance to configurable sets of over 1000 built-in static analysis rules for Java * Provides templates for OWASP Top 10, CWE-SANS Top 25, PCI DSS, and other security static standards * Allows easy GUI-based customization of built-in rules * Identifies and prevents concurrency defects such as deadlocks, race conditions, missed notification, infinite loops, data corruption other threading problems * Automatically creates robust low-noise regression test suites–even for large code bases * Execute tests created in any open-format unit testing tool, including out-of-the-box support for JUnit- and TestNG– based testsIntegrates and extends manually-written unit test cases * Continuously executes the test suite to identify regressions and unexpected side effects * Performs runtime error detection as tests execute * Parameterizes test cases for use with varied, controlled test input values (runtime-generated, user-defined, or from data sources) * Monitors test coverage with multiple metrics * Tracks code coverage from manual tests and test scripts * Steps through tests with the debugger * Tests individual methods, classes, or large, complex applications * Calculates metrics such as Inheritance Depth, Lack Of Cohesion, Cyclomatic Complexity, Nested Blocks Depth, Number Of Children * Identifies duplicate and unused code * Shares test settings and files team-wide or organization-wide * Generates HTML, PDF, XML, and custom reports - Tracks how test results and code quality change over time - Provides GUI (interactive) and command-line (batch) mode

* Below are some examples of analyses that can be run in PLATO and the options that are available to the user. These examples are intended as a jumping off point for the user to customize their own analyses. For a handy list of all available commands and options, organized by function, see the PLATO Quick Reference, which lists the commands by function and is cross-referenced to their location in the manual. * Recode PED/MAP to Binary PLINK format $ plato load-data --file geno output-bed --file binarygeno * Recode Binary PLINK to PED/MAP, Only a Single Chromosome $ plato load-data --bfile bingeno --chrom 22 \ output-ped --ped geno.ped --map custom_geno.map * Perform a Simple Case/Control GWAS (no covariates, Bonferroni corrected p-values) $ plato load-data --bfile bingeno \ logistic --correction Bonferroni * PheWAS on Quantitative Outcomes using Markers with MAF between 10% and 40% $ plato load-data --bfile bingeno \ load-trait --file pheno.txt --missing=”-999” \ filter-maf --min 0.1 --max 0.4 linear --phewas --covariates AGE,BMI * EWAS (No Genetic Data, Quantitative Predictor Variables) $ plato load-trait --file pheno.txt --dummy-samples --extra-samples logistic --exclude-markers --use-traits --outcome PHENO * Concordance Checking (VCF vs. PED/MAP w/o FID) $ plato load-data --vcf-file data.vcf.gz concordance --file geno --no-fid * GWAS with Dog Data and Permutation Testing $ plato --chroms 38 load-data --file dog_geno logistic --permutations 1000